Gene

Tcacao Thecc1EG000004

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Tcacao_Thecc1EG000004
Thecc1EG000004
scaffold_1 16143 17240 Phytozome v1.1 Theobroma_cacao
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Tcacao_Thecc1EG000004t1
Thecc1EG000004t1
PAC:27435067
High No 1098
Coding potential...
Type: noncoding Potential: -1.124
Folding energies...
MFEI: -22.313 AMFE: -0.645
GC content
%: 34.608


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Thecc1EG000004.png