Gene

Rcommunis 27386.t000002

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Rcommunis_27386.t000002
27386.t000002
27386 1813 2097 Phytozome v0.1 Ricinus_communis
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Rcommunis_27386.m000162
27386.m000162
PAC:16798189
Low No 285
Coding potential...
Type: noncoding Potential: -0.687
Folding energies...
MFEI: -33.474 AMFE: -0.539
GC content
%: 62.105


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Rcommunis_27386.m000162  SwissProt 2015-06-01 D5UU90 1.0e-4


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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