Gene

Ppersica Prupe.1G003800

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Ppersica_Prupe.1G003800
Prupe.1G003800
Pp01 372862 374457 Phytozome v2.1 Prunus_persica
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Ppersica_Prupe.1G003800.1
Prupe.1G003800.1
PAC:32117439
High No 285
Coding potential...
Type: noncoding Potential: -0.865
Folding energies...
MFEI: -21.930 AMFE: -0.558
GC content
%: 39.298


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Prupe.1G003800.png