Gene

Mtruncatula Medtr0001s0380

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Mtruncatula_Medtr0001s0380
Medtr0001s0380
scaffold0001 158433 159000 Phytozome Mt4.0v1 Medicago_truncatula
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Mtruncatula_Medtr0001s0380.1
Medtr0001s0380.1
PAC:31084611
Low No 204
Coding potential...
Type: noncoding Potential: -0.788
Folding energies...
MFEI: -22.451 AMFE: -0.515
GC content
%: 43.627


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Mtruncatula_Medtr0001s0380.1  RepBase (RepeatMasker) 2014-01-31 Gypsy-47_STu-I


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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