Gene

Mtruncatula Medtr0001s0010

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Mtruncatula_Medtr0001s0010
Medtr0001s0010
scaffold0001 3537 3979 Phytozome Mt4.0v1 Medicago_truncatula
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Mtruncatula_Medtr0001s0010.1
Medtr0001s0010.1
PAC:31084625
High No 299
Coding potential...
Type: noncoding Potential: -0.895
Folding energies...
MFEI: -26.622 AMFE: -0.658
GC content
%: 40.468


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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