Gene

MpusillaCCMP1545 MicpuC2.EuGene.0000010119

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

MpusillaCCMP1545_MicpuC2.EuGene.0000010119
MpusillaCCMP1545_MicpuC2.EuGene.0000010119
scaffold_1 262432 262746 Phytozome v3.0 Micromonas_pusilla_CCMP1545
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

MpusillaCCMP1545_49895
MpusillaCCMP1545_49895
PAC:27344973
Low Yes 315
Coding potential...
Type: noncoding Potential: -1.042
Folding energies...
MFEI: -51.714 AMFE: -0.693
GC content
%: 74.603


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

MpusillaCCMP1545_MicpuC2.EuGene.0000010119.png