Gene

Gmax Glyma.01G000200

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Gmax_Glyma.01G000200
Glyma.01G000200
Chr01 58975 67527 Phytozome Wm82.a2.v1 Glycine_max
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Gmax_Glyma.01G000200.1
Glyma.01G000200.1
PAC:30543475
Low No 1046
Coding potential...
Type: noncoding Potential: -0.567
Folding energies...
MFEI: -26.702 AMFE: -0.648
GC content
%: 41.205


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Gmax_Glyma.01G000200.1  SwissProt 2015-06-01 Q5Z5A8 3.0e-4


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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