Gene

Bdistachyon Bradi1g00217

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Bdistachyon_Bradi1g00217
Bradi1g00217
Bd1 52489 52869 Phytozome v3.1 Brachypodium_distachyon
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Bdistachyon_Bradi1g00217.1
Bradi1g00217.1
PAC:32794445
Low No 381
Coding potential...
Type: noncoding Potential: -0.731
Folding energies...
MFEI: -36.877 AMFE: -0.524
GC content
%: 70.341


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Bdistachyon_Bradi1g00217.1  RepBase (RepeatMasker) 2014-01-31 MuDR-17_SBi


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Bradi1g00217.png