Gene

Atrichopoda evm 27.TU.AmTr v1.0 scaffold00001.106

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Atrichopoda_evm_27.TU.AmTr_v1.0_scaffold00001.106
evm_27.TU.AmTr_v1.0_scaffold00001.106
AmTr_v1.0_scaffold00001 1812613 1812921 Phytozome v1.0 Amborella_trichopoda
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Atrichopoda_evm_27.model.AmTr_v1.0_scaffold00001.106
evm_27.model.AmTr_v1.0_scaffold00001.106
PAC:31551097
High No 309
Coding potential...
Type: noncoding Potential: -1.591
Folding energies...
MFEI: -25.275 AMFE: -0.524
GC content
%: 48.220


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

evm_27.TU.AmTr_v1.0_scaffold00001.106.png